gi_545778205_gb_U000_157

cmsearch-Rfam

Family :

OmrA-B

Id:

RF00079

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

95.5

E-value:

4.4e-19

From sequence:

2976189

To sequence:

2976102

Alignments:

                                                   v                             v                               NC
                               :::::::::::::::<<<<<<..------<<<<<<_____>>>>>>---->------>>>>><<<<<<<<____>>>>>>> CS
               RF00079       1 CCCAGAGGUAUUGAUuGGUGa..uuaauaggcacgcucuucgugccuAauuuaaUUgCACCaaCCUgCGCaGAUGCGcAGG 79     
                               CCCAGAGGUAUUGAUUGGUGA  UUA+U+GG:ACGCUCUUCGU:CC+  U  ++UUGCACCAACCUGCGC+GAUGCGCAGG
  gi_545778205_gb_U000 2976189 CCCAGAGGUAUUGAUUGGUGAgaUUAUUCGGUACGCUCUUCGUACCCUGU-CUCUUGCACCAACCUGCGCGGAUGCGCAGG 2976110
                               ********************6669***********************987.****************************** PP

                                        NC
                               >::::::: CS
               RF00079      80 uUUUUUUU 87     
                               UUUUUUUU
  gi_545778205_gb_U000 2976109 UUUUUUUU 2976102
                               ******** PP

>>

RNAfold
>gi_545778205_gb_U000_157
AAAAAAACCUGCGCAUCCGCGCAGGUUGGUGCAAGAGACAGGGUACGAAG
AGCGUACCGAAUAAUCUCACCAAUCAAUACCUCUGGG
......((((((((....))))))))(((((..(((.....((((((.....))))))......))))))))............... (-31.50)

Length sequence

: 87

Length match:

86