gi_545778205_gb_U000_158

cmsearch-Rfam

Family :

OmrA-B

Id:

RF00079

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

85.5

E-value:

1.1e-16

From sequence:

2976385

To sequence:

2976304

Alignments:

                                              v           v               v               v                      NC
                               :::::::::::::::<<<<<<------<<<<<<_____>>>>>>---->------>>>>><<<<<<<<____>>>>>>>>: CS
               RF00079       1 CCCAGAGGUAUUGAUuGGUGauuaauaggcacgcucuucgugccuAauuuaaUUgCACCaaCCUgCGCaGAUGCGcAGGuU 81     
                               CCCAGAGGUAUUGAU GGUGA     A :CA::+UC  ::UG: +A +U AAUU+CACC :CCUGCGCAGAUGCGCAGG:U
  gi_545778205_gb_U000 2976385 CCCAGAGGUAUUGAUAGGUGA-----AGUCAACUUCGGGUUGAGCACAUGAAUUACACCAGCCUGCGCAGAUGCGCAGGUU 2976310
                               ********************9.....9****************************************************** PP

                                      NC
                               :::::: CS
               RF00079      82 UUUUUU 87     
                               UUUUUU
  gi_545778205_gb_U000 2976309 UUUUUU 2976304
                               ****** PP

RNAfold
>gi_545778205_gb_U000_158
GCAAAAAAAACCUGCGCAUCUGCGCAGGCUGGUGUAAUUCAUGUGCUCAA
CCCGAAGUUGACUUCACCUAUCAAUACCUCUGGGAUC
..........(((((((....)))))))..(((((.......(((.(((((.....)))))...)))......)))))......... (-22.80)

Length sequence

: 87

Length match:

80