gi_545778205_gb_U000_162

cmsearch-Rfam

Family :

P26

Id:

RF00630

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This small RNA (sRNA) was computationally identified in the genome of the opportunistic pathogen Pseudomonas aeruginosa
and its expression verified by northern blot analysis [1]. P26 is conserved across many Gammaproteobacteria
species and appears to be consistently located between the DNA directed RNA polymerase (beta subunit)
and 50S ribosomal protein L7/L12 genes. There are two eukaryotic sequences (AAGJ02000785.1 and AAAB01036679.1) included
in this alignment which appear to be contamination.

Score:

32.4

E-value:

0.00014

From sequence:

2664305

To sequence:

2664252

Alignments:

                                            v                      v           v      v           NC
                               :::::::::::::<<<<<---<<____>>--->>>>>--<<<<<<<<<<______>>>>>>>>>>: CS
               RF00630       1 aacuUUgaGuuugCAGCCuGAGcuuuagCaaAGGCUGAUGGCuGGUGgCUUUUUAGcCACCgGCCU 66     
                               ++ UUU  G  U   GCCUGA     A    AGGC  A GGC GGUG: U  U   :CACC GCCU
  gi_545778205_gb_U000 2664305 GUAUUUCGGAAUAGCGCCUGA-----A----AGGCG-AGGGCGGGUGAGUGAU--AUCACCCGCCU 2664252
                               *********************.....5....9****.****************..*********** PP

>>

RNAfold
>gi_545778205_gb_U000_162
GACUCAGGCGGGUGAUAUCACUCACCCGCCCUCGCCUUUCAGGCGCUAUU
CCGAAAUACUUCCUC
......(((((((((......)))))))))..(((((...))))).................... (-25.50)

Length sequence

: 65

Length match:

52