gi_545778205_gb_U000_164

cmsearch-Rfam

Family :

P26

Id:

RF00630

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This small RNA (sRNA) was computationally identified in the genome of the opportunistic pathogen Pseudomonas aeruginosa
and its expression verified by northern blot analysis [1]. P26 is conserved across many Gammaproteobacteria
species and appears to be consistently located between the DNA directed RNA polymerase (beta subunit)
and 50S ribosomal protein L7/L12 genes. There are two eukaryotic sequences (AAGJ02000785.1 and AAAB01036679.1) included
in this alignment which appear to be contamination.

Score:

26.0

E-value:

0.006

From sequence:

4181015

To sequence:

4180964

Alignments:

                                            v                      v                              NC
                               :::::::::::::<<<<<---<<____>>--->>>>>--<<<<<<<<<<______>>>>>>>>>>: CS
               RF00630       1 aacuUUgaGuuugCAGCCuGAGcuuuagCaaAGGCUGAUGGCuGGUGgCUUUUUAGcCACCgGCCU 66     
                                + +U G+G +U        AGC    GCAAA     A GGC:GGUG:CU    AG:CACC:GCC 
  gi_545778205_gb_U000 4181015 CUACUGGCGCCUUA-----CAGC----GCAAA-----AAGGCUGGUGACUAAAAAGUCACCAGCCA 4180964
                               **********9995.....4688....88888.....***************************** PP

RNAfold
>gi_545778205_gb_U000_164
GGCUGAUGGCUGGUGACUUUUUAGUCACCAGCCUUUUUGCGCUGUAAGGC
GCCAGUAGCGUUUCA
.((((..(((((((((((....))))))))))).....(((((....)))))...))))...... (-30.10)

Length sequence

: 65

Length match:

50