gi_545778205_gb_U000_165

cmsearch-Rfam

Family :

P6

Id:

RF01683

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

22.0

E-value:

0.0012

From sequence:

3852679

To sequence:

3852864

Alignments:

                                     v v                                                                         NC
                               {{{{-{{{{{-{{{-{{{{,,~~~~~~,,{{{{{{,,,{{{--{{{{~~~~~~~~~~~~~}}}}--}}}~~~~~~}}}-}} CS
               RF01683       1 cCGaAGgGGaUgGCAuCGaUU*[23]*CAGGCcGCCGACGGAUauGC*[ 8]**[325]*GCauCACCG*[27]*GCgaGC 439    
                               CCG:A: G :UG CA                                                                  
  gi_545778205_gb_U000 3852679 CCGGAAUGCCUGUCA------*[41]*--------------------*[16]**[ 14]*---------*[40]*------ 3852804
                               ************998.........*.........................*......*..............9........ PP

                                               v v                               v            v         NC
                               },,,}}}}---}}}-}}}}}-}}}}--------.--------<<<<<<<<<<<<______>>>>>>>>>>>> CS
               RF01683     440 CCAUuCGaaACGCcCuCCcCCuCGgCCCGCGCC.AAAUGAAAGaCcCCGCGCgGCUCGCACcGCGCGGgGuC 510    
                                          G CC: C : :CGG   G GC  AAA GAAA:ACCCCGC CGG U GC CCG GCGGGGU:
  gi_545778205_gb_U000 3852805 -----------GGCCGACUUUCCGGGAGGUGCUuAAACGAAAAACCCCGCCCGGUUUGCGCCG-GCGGGGUU 3852864
                               ...........99******************8637889************************9.9******* PP

RNAfold
>gi_545778205_gb_U000_165
AGUCGCACCCGGUCCGCUACAGGCCAUACAGACCGCCGGUUUACCGUCGG
UGCGCGCCAUUCCCUGAGCGAUAAAGCCCGCGCCCUGUUCAUGACGGGCC
AGAAUAUGGCGGAUUUGCGUGCUUUGGCUUAAGGCAUCGUAAACAGGCAG
GAUAGAACCGCCCGGAAUGCCUGUCACAAUCUUAAUGCCCUGCUGUUCCA
GGAAAUGAACGAUAAAUUCUGCGCCGGUAAAGCGCUUACGCGUCGAUGUU
GUGCCCGAACUUGCCAUGCUCCAGUCCUUUUCUUCUGGGCCGACUUUCCG
GGAGGUGCUUAAACGAAAAACCCCGCCCGGUUUGCGCCGGCGGGGUUUUG
GAAUCGUGUGUUGUUCCAGUCCCUACGGCGCAUUGCCGACGACCACCACC
ACACGCACGACGACCACUGCGGCGGAUGGCGCAGUUGGUAGUAGUUUUGC
GUUGAGCAUGGAAGUAGUCAUUGGGGACCUUGUUGGUUUUGUGUUUAACA
AUAUUUAUA
(((((((((((((..(((...(((..........))))))..))))..))))))((((((...(((.(((........)))((((.(((...))))))))))...))))))...((((((((((((...))))))).)))))(((((((((..........))....)))))))((((((.((.((((..((((...((.((....(((.......)))....))))...)))).....)))).)).))))))(((((((((.((((((((..((((.........))))((......))((.((((..........((((((((((.(((....)))))))))))))((((((........))))))(((....((((.....))))..))))))).))..(((((.(((.(((((((((.(....).))))).))))....))).))))).)))))))))))).....)))))((((.....))))((((.....)))).))).... (-172.10)

Length sequence

: 509

Length match:

184