gi_545778205_gb_U000_166

cmsearch-Rfam

Family :

Phe_leader

Id:

RF01859

Type:

Cis-reg; leader;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0006520 cellular amino acid metabolic process

Description:

not description

Score:

30.4

E-value:

0.0076

From sequence:

1260960

To sequence:

1260886

Alignments:

                                                 v                    v                                     NC
                               :::::::::::::::((((-((((((~~~~~~))))))-))))---<<<<<<<<<<____>>>>>>>>>>:::::: CS
               RF01859       1 aAUgAaacauauacuGuUcUUuUUcG*[55]*CgAAaAcgAaCaauAAagCCuCCcaAccgGGaGGcuUUUUUuuU 125    
                                A+GAA C + + CUG:: U:UU:::      :::AA:C ::C+ +AA::CC: C    C G :GG::UUUUU U 
  gi_545778205_gb_U000 1260960 GAAGAAUCGAUCUCUGCCAUGUUCGA*[ 7]*UCGAACCCGGCUCAAAGACCCGCUG--CGGCGGGUUUUUUUGUC 1260886
                               ************************97...9..79**********************9..9**************** PP

RNAfold
>gi_545778205_gb_U000_166
UAGGUCAUACAAAUGGAUAUUACAGACAAAAAAACCCGCCGCAGCGGGUC
UUUGAGCCGGGUUCGAUUAGUGUUCGAACAUGGCAGAGAUCGAUUCUUCG
UUGCUGAUACGACGAAUCGCUUCG
...(((..................))).......(((((....)))))(((((..((((.((((((.......)))))).))))))))).((((((.((((.......)))).))))))..... (-37.00)

Length sequence

: 124

Length match:

73