gi_545778205_gb_U000_167

cmsearch-Rfam

Family :

Phe_leader

Id:

RF01859

Type:

Cis-reg; leader;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0006520 cellular amino acid metabolic process

Description:

not description

Score:

77.4

E-value:

3e-13

From sequence:

1799276

To sequence:

1799152

Alignments:

                                                 v       v                  v            v v       v             NC
                               :::::::::::::::((((-((((((((((((((-((((,....,<<<<______>>>><<<<___>>>>,,))))-)))) CS
               RF01859       1 aAUgAaacauauacuGuUcUUuUUcGcuUucuuuUUuacu....uucCcCUgAuugGgaGgcguUUcguCGUguaAaaaag 77     
                               +A+G AA+ +AU CUG:U UUUU:CG UU:::UUUU:ACU    + CC:  +   :GG G    U    CG+GU:A AA::
  gi_545778205_gb_U000 1799276 CAAGCAAUGAAUGCUGCUAUUUUCCGCUUCUUUUUUUACUuuagCACCUGAAUCCAGGAGG--CUA--GCGCGUGAGAAGA 1799200
                               ****************************************766444555444444555543..244..89*********** PP

                                  v       v                 v    v                NC
                               ))))))))))-))))--..-<<<<<<<<<<____>>>>>>>>>>:::::: CS
               RF01859      78 aAagCgAAaAcgAaCaa..uAAagCCuCCcaAccgGGaGGcuUUUUUuuU 125    
                               :AA CG:AAA+ A:C     AAAGCCUCC A    GGAGGCUUUUUUU U
  gi_545778205_gb_U000 1799199 GAAACGGAAAACAGCGCcuGAAAGCCUCCCA--GUGGAGGCUUUUUUUGU 1799152
                               ***************85559***********..9**************** PP

>>

RNAfold
>gi_545778205_gb_U000_167
CAAAAAAAGCCUCCACUGGGAGGCUUUCAGGCGCUGUUUUCCGUUUCUCU
UCUCACGCGCUAGCCUCCUGGAUUCAGGUGCUAAAGUAAAAAAAGAAGCG
GAAAAUAGCAGCAUUCAUUGCUUG
.....(((((((((....))))))))).....((((((((((((((((........((..((((..((((....)))).))))..))......))))))))))))))))((((.....)))).. (-51.10)

Length sequence

: 124

Length match:

123