gi_545778205_gb_U000_168

cmsearch-Rfam

Family :

Phe_leader

Id:

RF01859

Type:

Cis-reg; leader;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0006520 cellular amino acid metabolic process

Description:

not description

Score:

130.8

E-value:

4.2e-25

From sequence:

2737598

To sequence:

2737723

Alignments:

                                                               v                                         v       NC
                               :::::::::::::::((((-((((((((((((((-((((,,<<<<______>>>><<<<___>>>>,,))))-)))))))) CS
               RF01859       1 aAUgAaacauauacuGuUcUUuUUcGcuUucuuuUUuacuuucCcCUgAuugGgaGgcguUUcguCGUguaAaaaagaAag 81     
                               +AUGAAACA+AUAC+GUU:UU:UUCGC:UUCU UUU:AC+UUCCCCUGA UGGGAGGCGUUUCGUCGUGU:AAA AGAA:G
  gi_545778205_gb_U000 2737598 CAUGAAACACAUACCGUUUUUCUUCGCAUUCUUUUUUACCUUCCCCUGAAUGGGAGGCGUUUCGUCGUGUGAAACAGAAUG 2737678
                               ********************************************************************************* PP

                                                                             NC
                               ))))))-))))---<<<<<<<<<<_.___>>>>>>>>>>:::::: CS
               RF01859      82 CgAAaAcgAaCaauAAagCCuCCca.AccgGGaGGcuUUUUUuuU 125    
                               CGAA:AC:AACAAUAA:GCC:CCCA A+CGGG:GGC:UUUUUU+U
  gi_545778205_gb_U000 2737679 CGAAGACGAACAAUAAGGCCUCCCAaAUCGGGGGGCCUUUUUUAU 2737723
                               ********************************************* PP

>>

RNAfold
>gi_545778205_gb_U000_168
AUGAAACACAUACCGUUUUUCUUCGCAUUCUUUUUUACCUUCCCCUGAAU
GGGAGGCGUUUCGUCGUGUGAAACAGAAUGCGAAGACGAACAAUAAGGCC
UCCCAAAUCGGGGGGCCUUUUUUAU
..............((((.((((((((((((.((((((((((((......))))))((......)).)))))).)))))))))))).))))...((((((((((.....))))))))))...... (-52.20)

Length sequence

: 125

Length match:

124