gi_545778205_gb_U000_169

cmsearch-Rfam

Family :

Phe_leader

Id:

RF01859

Type:

Cis-reg; leader;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0006520 cellular amino acid metabolic process

Description:

not description

Score:

34.7

E-value:

0.00086

From sequence:

2737704

To sequence:

2737592

Alignments:

                                                 v             v   v     v          v                   v   v    NC
                               :::::::::::::::((((-((((((((((((((-((((,,<<<<______>>>><<<<___...>>>>,,))))-))))) CS
               RF01859       1 aAUgAaacauauacuGuUcUUuUUcGcuUucuuuUUuacuuucCcCUgAuugGgaGgcguUU...cguCGUguaAaaaaga 78     
                                  G A   + UA+UGUU  U:UUCGC:UUCU UUU AC +: C:  +   :G : :C:+UU   :G:   GU AAA AGA
  gi_545778205_gb_U000 2737704 UUGGGAGGCCUUAUUGUUCGUCUUCGCAUUCUGUUUCACACGACGAAA---CGCCUCCCAUUcagGGGAAGGUAAAAAAGA 2737627
                               ****************************************99998554...88898888776676788888********** PP

                                         v                         NC
                               )))))))))-))))---<<<~~~~~~>>>:::::: CS
               RF01859      79 AagCgAAaAcgAaCaauAAa*[18]*uUUUUUuuU 125    
                               A:GCGAA:A+ AAC    A        U UUU UU
  gi_545778205_gb_U000 2737626 AUGCGAAGAAAAACGG-UAU*[ 7]*AUGUUUGUU 2737592
                               **************84.554...6..556****** PP

>>

RNAfold
>gi_545778205_gb_U000_169
AAGGAAACAAACAUGAAACACAUACCGUUUUUCUUCGCAUUCUUUUUUAC
CUUCCCCUGAAUGGGAGGCGUUUCGUCGUGUGAAACAGAAUGCGAAGACG
AACAAUAAGGCCUCCCAAAUCGGG
..........................((((.((((((((((((.((((((((((((......))))))((......)).)))))).)))))))))))).))))..........(((.....))) (-35.30)

Length sequence

: 124

Length match:

111