gi_545778205_gb_U000_170

cmsearch-Rfam

Family :

PK-G12rRNA

Id:

RF01118

Type:

Gene; rRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

Not found

Description:

not description

Score:

108.4

E-value:

2.5e-27

From sequence:

228041

To sequence:

228148

Alignments:

                                                                                                                  NC
                              :<<--<<<<<<<<<<-<<<<<<_______>>>>>>--->>-------------->>>>>>>>--------------------- CS
               RF01118      1 cgCaAagGuuccCUcAgcccGgUuGGAAAcCgggcguagAGUGuAAaGGcAuAAGggagCuuGACUGcGAGAcugACAagUCG 83    
                              C:C AAGGUU::CU:A:CC:G:U+GGA A:C:GG:G +:AGUG+AA+GGCAUAAG::AGCUUGACUGCGAG  UGAC    CG
  gi_545778205_gb_U000 228041 CACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGACUGCGAGCGUGACGGCGCG 228123
                              *********************************************************************************** PP

                                                        NC
                              ----------------->>:::::: CS
               RF01118     84 AGCAGguaCGAAAGuaGGcCuUAGU 108   
                              AGCAGGU CGAAAG AGG:C+UAGU
  gi_545778205_gb_U000 228124 AGCAGGUGCGAAAGCAGGUCAUAGU 228148
                              ************************* PP

>>

RNAfold
>gi_545778205_gb_U000_170
ACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCA
UAAGCCAGCUUGACUGCGAGCGUGACGGCGCGAGCAGGUGCGAAAGCAGG
UCAUAGU
....(((((((((..(((((((.....))))))).....((((....)))).)))))))))..((((..((((....))))..)))).(((....)))......... (-37.40)

Length sequence

: 107

Length match:

106