gi_545778205_gb_U000_175

cmsearch-Rfam

Family :

PK-G12rRNA

Id:

RF01118

Type:

Gene; rRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

Not found

Description:

not description

Score:

108.4

E-value:

2.5e-27

From sequence:

4170923

To sequence:

4171030

Alignments:

                                                                                                                 NC
                               :<<--<<<<<<<<<<-<<<<<<_______>>>>>>--->>-------------->>>>>>>>------------------- CS
               RF01118       1 cgCaAagGuuccCUcAgcccGgUuGGAAAcCgggcguagAGUGuAAaGGcAuAAGggagCuuGACUGcGAGAcugACAagU 81     
                               C:C AAGGUU::CU:A:CC:G:U+GGA A:C:GG:G +:AGUG+AA+GGCAUAAG::AGCUUGACUGCGAG  UGAC    
  gi_545778205_gb_U000 4170923 CACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGACUGCGAGCGUGACGGCG 4171003
                               ********************************************************************************* PP

                                                           NC
                               ------------------->>:::::: CS
               RF01118      82 CGAGCAGguaCGAAAGuaGGcCuUAGU 108    
                               CGAGCAGGU CGAAAG AGG:C+UAGU
  gi_545778205_gb_U000 4171004 CGAGCAGGUGCGAAAGCAGGUCAUAGU 4171030
                               *************************** PP

>>

RNAfold
>gi_545778205_gb_U000_175
ACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCA
UAAGCCAGCUUGACUGCGAGCGUGACGGCGCGAGCAGGUGCGAAAGCAGG
UCAUAGU
....(((((((((..(((((((.....))))))).....((((....)))).)))))))))..((((..((((....))))..)))).(((....)))......... (-37.40)

Length sequence

: 107

Length match:

106