gi_545778205_gb_U000_178

cmsearch-Rfam

Family :

Pseudomon-1

Id:

RF01719

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

27.1

E-value:

0.006

From sequence:

3136555

To sequence:

3136663

Alignments:

                                                                 v                    v    vvv                   NC
                               :::::::::::::::::.::::::::::::::::<<<<<<<<~~~~~~>>>>>>>>.---<<<<<<<<<<<<<<_______ CS
               RF01719       1 AUGCUCCUauGuuGUGU.UaAGUGUUGGCAGAUAuCcGGaCC*[10]*GGuCCgGa.cUUgaaCCCCGgaCuuCcCCCUCC 83     
                               AU C C UAUG + UG  UAA U UUGG A AUA ::: A::      ::U :::   UU   CCCCG:ACU: +   UC 
  gi_545778205_gb_U000 3136555 AUUCACAUAUGAAAUGAaUAAAUAUUGGAAUAUAUAAAUAUU*[ 1]*AAUAUUUUgAUUAAUCCCCGUACUGAUUAUUCU 3136630
                               ***************9538999************98876665...5..455555544777777****************** PP

                                                 vvv             NC
                               ______>>>>>>>>>>>->>>:::::::::::: CS
               RF01719      84 CCAUAcGaaGucCGGGGUuuuUUUUGCCuGgAA 116    
                                CAUA  :AGU:CGGGGU   U    C UG A 
  gi_545778205_gb_U000 3136631 UCAUAAUCAGUACGGGGUUGCUACAACAUGUAU 3136663
                               *****************99999999******** PP

RNAfold
>gi_545778205_gb_U000_178
UAUAUUCACAUAUGAAAUGAAUAAAUAUUGGAAUAUAUAAAUAUUGAAUA
UUUUGAUUAAUCCCCGUACUGAUUAUUCUUCAUAAUCAGUACGGGGUUGC
UACAACAUGUAUUACU
(((((((..((((...........))))..)))))))..........((((.(((......(((((((((((((((.....)))))))))))))))......))).))))...... (-30.70)

Length sequence

: 116

Length match:

107