gi_545778205_gb_U000_179

cmsearch-Rfam

Family :

psRNA2

Id:

RF02349

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

31.0

E-value:

1.3e-05

From sequence:

530019

To sequence:

530190

Alignments:

                                       v                                                   v                vvv   NC
                              (((((((-((,,,<<<<____>>>>,,<<<<<.<<<<-<<_____.___>>->>>>>>>>>))))))))).-[[,,,,(((-- CS
               RF02349      1 GGGUUACUCCUUugCGcUUuCgCGcUugguUU.GAUaAaGAUUCG.CACCuCuAUCAAaccGGGUAACCC.CgCCUcUuggCA 80    
                              G:GUUAC+            C    UUG:UUU GAUAA: AUUCG CAC : UAUCAAA:C  GUAAC:C C: C +U   CA
  gi_545778205_gb_U000 530019 GAGUUACCU-----------C----UUGUUUUgGAUAAGGAUUCGaCACUCAUAUCAAAACCGGUAACUCuCAACCUU--UCA 530084
                              *******73...........3....667777746**********95566677*********9********66998855..699 PP

                                   v     vv         vv                                v         vvv               NC
                              -((-((,,,<<<<<<<___>>>>>->>,<<<<-<_______________>>>>>,,))..))----))),,,,,~~~~~~,,, CS
               RF02349     81 AGgCcuaCUGUCaGAuCAAaUCuGAACUaCugCAcuUuAauAuugcuaAUcaGuguag..cCgauuccaUuUuc*[40]*aau 195   
                              AGGCC + UGU  GA:CAA:UC   ACUA U:CA +U+       +   U:A U++ G  CC   U +A   ++       A 
  gi_545778205_gb_U000 530085 AGGCCAUGUGUCAGAUCAAGUCGCGACUAAUACAAAUACG-----UCCCUCAUUACCGcgCC---UUAACCCAU*[31]*CAA 530184
                              99999999***************99********9877644.....34446777777653255...333333222...6..777 PP

                                     NC
                              ,,]]:: CS
               RF02349    196 caGcuu 201   
                              C+ :UU
  gi_545778205_gb_U000 530185 CUUUUU 530190
                              779*** PP

RNAfold
>gi_545778205_gb_U000_179
AGUAUGAAGCAUGAGAGUUACCUCUUGUUUUGGAUAAGGAUUCGACACUC
AUAUCAAAACCGGUAACUCUCAACCUUUCAAGGCCAUGUGUCAGAUCAAG
UCGCGACUAAUACAAAUACGUCCCUCAUUACCGCGCCUUAACCCAUUCCG
CCACUUCCGCCCACUCACCGCGAAAGACAACUUUUUCCGCUUUUUUCUCA
A
((...(((((.(((((((((((....(((((((((.((.........)).)).))))))).))))))))))).........(((...(((.......(((.((((..........................)))).)))....)))...))).(((.(((.........))).)))............)))))...))... (-37.40)

Length sequence

: 201

Length match:

170