gi_545778205_gb_U000_18

cmsearch-Rfam

Family :

Archaea_SRP

Id:

RF01857

Type:

Gene;

Taxonomy:

Bacteria; Archaea;

Ontology:

GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognitionRF01857

Description:

not description

Score:

28.5

E-value:

0.00017

From sequence:

476479

To sequence:

476521

Alignments:

                                        v                        v        NC
                              <<<<<<---<<<<<----<<<____>>>---->>>>>>>>>>> CS
               RF01857    186 cggggcAACccgGcCAGGCCCGGAAGGGAGCAgCcgggccccg 228   
                              :::G   AC: GG:CAGG:CCGGAAGG:AGCA:CC :  C:::
  gi_545778205_gb_U000 476479 UCUGUUUACCAGGUCAGGUCCGGAAGGAAGCAGCCAAGGCAGA 476521
                              ******************************************* PP

RNAfold
>gi_545778205_gb_U000_18
GUGAAGUCGCAUUGCGCAAGAAACCAGCAUCUGGCACGCGAUGGGUUGCA
AUUAGCCGGGGCAGCAGUGAUAAUGCGCCUGCGCGUUGGUUCUCAACGCU
CUCAAUGGGGGCUCUGUUGGUUCUCCCGCAACGCUACUCUGUUUACCAGG
UCAGGUCCGGAAGGAAGCAGCCAAGGCAGAUGACGCGUGUGCCGGGAUGU
AGCUGGCAGGGCCCCCACCCAUUUCUGCCUCCCACCGUUUCGUCAAAAAA
UCCCAACAUGGCUAAACUUUAACCACAACUGACGUCGCAAGAAUUGUCUG
GCUGCGCAGUACGCUUCG
.(((((.((.((((((((.(...(((((((((.(((((((.(((((((...(((((((((((((.((((.....((....))((((((.....))))))......(((((((((((((((((((((((((((((..((((((((....(((....(((....)))....))).))))))).)..)))).)).))))).).)))))))))))))))))..)))).)))))))............................))))))....))))).))..)).))).)).)))..)).))))))))))))).))))))) (-118.30)

Length sequence

: 318

Length match:

41