gi_545778205_gb_U000_187

cmsearch-Rfam

Family :

rimP

Id:

RF01770

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

35.0

E-value:

0.0021

From sequence:

2653740

To sequence:

2653637

Alignments:

                                                                                                                 NC
                               :::::::::::::::::::::::::::::::::<<<<<<<<<.______>>>>>>>>>----------------------- CS
               RF01770       1 agcuauuuuuaguuuaucAGGGUCCAGuaacAuAAAgCCCCG.AuUUaUCGGGGcUUUUUGUUAUcUgAauuuuugcuuug 80     
                                GCU+ ++++   +  +   GG CCAG+AACA+AAA:CC C    UU+U G GG:UUUUUGUU U+U A          +G
  gi_545778205_gb_U000 2653740 UGCUGGAAAGGCCGCGAACCGGACCAGCAACAAAAAACCGCCuGAUUUUGGCGGUUUUUUGUUUUUUAA---------AGG 2653669
                               ************9999999***********************8777788*******************9.........444 PP

                                                                 NC
                               ----------<<<<.______.>>>>::::::: CS
               RF01770      81 uauuuuaAuUGGGC.UaUuaa.GCCCUUUUUUU 111    
                               +A + U A U   C U UU A G   U U UUU
  gi_545778205_gb_U000 2653668 AA-AGUGAAUUUACaUGUUUAaGUAAUAUCUUU 2653637
                               33.33444444555433332226677******* PP

>>

RNAfold
>gi_545778205_gb_U000_187
GUAAAAGAUAUUACUUAAACAUGUAAAUUCACUUUCCUUUAAAAAACAAA
AAACCGCCAAAAUCAGGCGGUUUUUUGUUGCUGGUCCGGUUCGCGGCCUU
UCCAGCAGGUU
......((..((((........))))..))...............(((((((((((((.......)))))))))))))((((((...((((...))))...)))))).... (-33.80)

Length sequence

: 111

Length match:

102