gi_545778205_gb_U000_188

cmsearch-Rfam

Family :

rimP

Id:

RF01770

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

98.9

E-value:

1.8e-16

From sequence:

3318124

To sequence:

3318024

Alignments:

                                                                                                                 NC
                               :::::::::::::::::::::::::::::::::<<<<<<<<<______>>>>>>>>>------------------------ CS
               RF01770       1 agcuauuuuuaguuuaucAGGGUCCAGuaacAuAAAgCCCCGAuUUaUCGGGGcUUUUUGUUAUcUgAauuuuugcuuugu 81     
                               ++C + + UU  ++U+++AGGGU CAGU+A+AUAAA:CCCCGAUUUAUCGGGG:UUUUUGUUAUCUGA         +U+ 
  gi_545778205_gb_U000 3318124 GACCGCAGUUGCGGUUAUAGGGUUCAGUUAUAUAAAGCCCCGAUUUAUCGGGGUUUUUUGUUAUCUGA---------CUAC 3318053
                               ********************************************************************.........**** PP

                                                              NC
                               ---------<<<<______>>>>::::::: CS
               RF01770      82 auuuuaAuUGGGCUaUuaaGCCCUUUUUUU 111    
                               A ++UAA+UGGGCU UUA GCCCUUUUUUU
  gi_545778205_gb_U000 3318052 AGAAUAACUGGGCU-UUAGGCCCUUUUUUU 3318024
                               **************.6666*********** PP

>>

RNAfold
>gi_545778205_gb_U000_188
ACAUAAAAAAAGGGCCUAAAGCCCAGUUAUUCUGUAGUCAGAUAACAAAA
AACCCCGAUAAAUCGGGGCUUUAUAUAACUGAACCCUAUAACCGCAACUG
CGGUCUGGAG
...........((((.....)))).(((((.(((....))))))))......((((((....))))))................((....(((((....)))))..)).. (-30.70)

Length sequence

: 110

Length match:

99