gi_545778205_gb_U000_189

cmsearch-Rfam

Family :

rli40

Id:

RF01472

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

27.3

E-value:

0.00015

From sequence:

1792202

To sequence:

1792260

Alignments:

                                       v               v   v                                  v  NC
                               :::::[[[[[[[--~~~~~~~]]]]]]]<<<<<<<<<<<<<<_______>>>>>>>>>>>->>>: CS
               RF01472       1 GaAAuuauccuuAA*[205]*gaggauaggaaaGCaCuGCaauuaauuuuuGCaGuGCuuUucca 263    
                                AAAU::U CU: A       :AG A:: :AA:G:AC:GC:AU +AU +U:GC:GU:C:UUU:+ 
  gi_545778205_gb_U000 1792202 AAAAUACUACUGUA*[  2]*CAGGAGU-AAAUGGACGGCGAUGUAUCAUCGCCGUCCAUUUUUC 1792260
                               ***********976....6..9******.99********************************** PP

RNAfold
>gi_545778205_gb_U000_189
AGUAACUUUCAUUUGUUCCAUGUUAACCACUUUUUCAGGGGUCCUUUUUU
UAGAUUAUCCUGAUUAUAAACGAAUAAUCCAUUUACGGAAUUUUUGUCUG
CAAAAUACUACUGUAUUCAGGAGUAAAUGGACGGCGAUGUAUCAUCGCCG
UCCAUUUUUCGACAUACUAGAUUCGUCUCGCCUGCCAGAAAUUUUUCUGC
CAAUAGACAUUAUCAAGUGAGGAACGCAUCACUCCCUUGCUGGUAGAGGC
GUGGAUAAAUUG
..........((((((.(((((((.((((.....((((((...((......))....))))))......(((((...(((......)))...)))))((.(..(((((....)))))..).)).(((((((((((((((...))))))))))))))).................((((....((.(((((....))))).))..)))).....((((.(((((.....)).))).)))).))))...))))))))))))).. (-72.40)

Length sequence

: 262

Length match:

57