gi_545778205_gb_U000_19

cmsearch-Rfam

Family :

ArcZ

Id:

RF00081

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This RNA was discovered in E. coli during a large scale screen [1]. SraH expression is
highly abundant in stationary phase, but low levels could be detected in exponentially growing cells
as well [1]. The function of this RNA is unknown.

Score:

120.3

E-value:

1.4e-28

From sequence:

3350577

To sequence:

3350684

Alignments:

                                                                                                                 NC
                               ::::::::::::::.::::<<<<<<<<_____________________.___>>>>>>>>------------<<<----<< CS
               RF00081       1 GUGCggccuaAaaa.cagugcuGcGCCcuuuuAaAuCAUCAuAAuaAu.uACGGCgCagcCAcgAUUUCCCUGGUGUUGGC 79     
                               GUGCGGCCU+AAAA CAGUGCUG:GCCCUU UAA UCAUCAUAAUAAU UACGGC:CAGCCA+GAUUUCCCUGGUGUUGGC
  gi_545778205_gb_U000 3350577 GUGCGGCCUGAAAAaCAGUGCUGUGCCCUUGUAACUCAUCAUAAUAAUuUACGGCGCAGCCAAGAUUUCCCUGGUGUUGGC 3350657
                               *************55*********************************999****************************** PP

                                                           NC
                               <<_______>>>>>>>::::::::::: CS
               RF00081      80 GCAGUAUUCGCGCACCCCGGUCUAgcC 106    
                               GCAGUAUUCGCGCACCCCGGUCUAGCC
  gi_545778205_gb_U000 3350658 GCAGUAUUCGCGCACCCCGGUCUAGCC 3350684
                               *************************** PP

RNAfold
>gi_545778205_gb_U000_19
UGCGGCCUGAAAAACAGUGCUGUGCCCUUGUAACUCAUCAUAAUAAUUUA
CGGCGCAGCCAAGAUUUCCCUGGUGUUGGCGCAGUAUUCGCGCACCCCGG
UCUAGCC
...((((((.....))).((((((((...((((..............))))))))))))..........((((.((..((((.......)))))).))))....))) (-27.50)

Length sequence

: 107

Length match:

106