gi_545778205_gb_U000_197

cmsearch-Rfam

Family :

rnk_leader

Id:

RF01771

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

124.3

E-value:

1.2e-24

From sequence:

644121

To sequence:

644013

Alignments:

                                                                                                                  NC
                              ::::::::::::::<<<-<<<<______>>>>>>>------------------------------------<<<<<<<<<<<< CS
               RF01771      1 UUcaggauUuacCuGaaUGUGAacUaaAUCACuuCAAAcaguGgGcAAcucUcAGUAUCAUCaugaGAguUaaACCCUCgCCG 83    
                              UU+AGGA+UU CCUGAAUGUGA+  AAAUCACUUCAAA+AGUG GCAAC+ UCAGUAUCAUCAUG+GAGUUAAACCCUC:CCG
  gi_545778205_gb_U000 644121 UUGAGGAAUUCCCUGAAUGUGACGCAAAUCACUUCAAAGAGUGAGCAACAGUCAGUAUCAUCAUGUGAGUUAAACCCUCGCCG 644039
                              *********************************************************************************** PP

                                                         NC
                              _____>>>>>>>>>>>>::::::::: CS
               RF01771     84 CcuGACGGcGAGGGUuuUCUUUUGGg 109   
                              CCUGACGG:GAGGGUUUUCUUUUGGG
  gi_545778205_gb_U000 644038 CCUGACGGUGAGGGUUUUCUUUUGGG 644013
                              ************************** PP

RNAfold
>gi_545778205_gb_U000_197
CCAAAAGAAAACCCUCACCGUCAGGCGGCGAGGGUUUAACUCACAUGAUG
AUACUGACUGUUGCUCACUCUUUGAAGUGAUUUGCGUCACAUUCAGGGAA
UUCCUCAA
........((((((((.((((...)))).))))))))........(((.(..((.....))..)))).(((((((((((((....))))).))))))))......... (-32.00)

Length sequence

: 108

Length match:

107