gi_545778205_gb_U000_199

cmsearch-Rfam

Family :

rnk_pseudo

Id:

RF01772

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

29.8

E-value:

0.007

From sequence:

4190425

To sequence:

4190319

Alignments:

                                 v                                      v                                        NC
                               :<<<<<------------~~~~~~-------------->>>>>------------.....------<<<<<<<<<<<<___ CS
               RF01772       1 cgccgcugGCUuGUgUAU*[17]*uGUcuGguauUccGgcggcgacuuagugagg.....gcucggaAAAcCCCgcCcUUC 87     
                               C: ::C  GC    +UAU       GUC GGUA+U+  G:: :GA+U + +GAG       ++ GG::AA:CCC:CC:U  
  gi_545778205_gb_U000 4190425 CGCAACCUGCG--AUUAU*[16]*AGUCCGGUAAUGGCGUUCUGAAUACCAGAGAuaauuCUCUGGCGAAACCCACCUUA- 4190338
                               *******7765..44444...6..68999999999999*****999999888888899999999***************9. PP

                                                     NC
                               _>>>>>>>>>>>>:::::::: CS
               RF01772      88 ggGgcGGGgUUUuGCUUUuUU 108    
                                :GG:GGG:UU:: +U UUUU
  gi_545778205_gb_U000 4190337 -AGGUGGGUUUUG-UUAUUUU 4190319
                               .***********9.******* PP

RNAfold
>gi_545778205_gb_U000_199
AAAAUAACAAAACCCACCUUAAGGUGGGUUUCGCCAGAGAAUUAUCUCUG
GUAUUCAGAACGCCAUUACCGGACUUUGCCUUGACCUUGCGAUAAUCGCA
GGUUGCGG
.........(((((((((....))))))))).((((((((....))))))))...((((...((......))..))))((.((((((.((((...)))))))))).)) (-38.80)

Length sequence

: 108

Length match:

105