gi_545778205_gb_U000_20

cmsearch-Rfam

Family :

asX2

Id:

RF02236

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

27.4

E-value:

0.0058

From sequence:

2530141

To sequence:

2530217

Alignments:

                                                                                                          NC
                               ::::::::::::.::<<<-<----<<-<~~~~~~>->>--->->>>--------<<<<<<<_____>>>>>>>: CS
               RF02236       1 UCGAAgGUuguU.GGGuGucCuuuGcag*[20]*uUgCCAAgCCgCAAcAAAAAaGCCCCGACAaGCGGGGCuU 87     
                               UCG AG U+  U  G :GU:    G: :      : :CC  : C:   C AAAAA:CCCCGACAAGCGGGG:UU
  gi_545778205_gb_U000 2530141 UCGCAGUUCUGUcAGUUGUU----GUUC*[15]*GCACC--AUCAAUGCUAAAAACCCCCGACAAGCGGGGGUU 2530217
                               ****9988755415666654....4443...4..34555..6688888899*********************** PP

RNAfold
>gi_545778205_gb_U000_20
UCGUUCGCAGUUCUGUCAGUUGUUGUUCGAUUGAUUCCAUAUCGCACCAU
CAAUGCUAAAAACCCCCGACAAGCGGGGGUUCGAAG
...((((.......((((((((.....))))))))........(((.......)))....((((((((.....)))))))))))). (-23.60)

Length sequence

: 86

Length match:

75