gi_545778205_gb_U000_200

cmsearch-Rfam

Family :

rnk_pseudo

Id:

RF01772

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

33.5

E-value:

0.001

From sequence:

850923

To sequence:

851017

Alignments:

                                 v                                               v                                NC
                              :<<<<<------------<<<<<<_____>>>>>>-------------->>>>>.------------------<<<<<<<<<< CS
               RF01772      1 cgccgcugGCUuGUgUAUUuaccccGCUGggguaGuGUcuGguauUccGgcggc.gacuuagugagggcucggaAAAcCCCgc 82    
                              +G: G  GGC   UG AUU      GC G     GUGU+ G UA+     C :C  A   ++U  G+G U + AAAA: CCGC
  gi_545778205_gb_U000 850923 UGACGUAGGCACCUGGAUU------GCCG-----GUGUUGGUUACC---GCUUCuAAUCACUUUGGUGAUAUAAAAAAUCCGC 850991
                              **********999999998......7777.....888876666565...*****5444444555555999************* PP

                                                         NC
                              <<____>>>>>>>>>>>>:::::::: CS
               RF01772     83 CcUUCggGgcGGGgUUUuGCUUUuUU 108   
                              C  UCG GGCGG :UUUUG+UUUU  
  gi_545778205_gb_U000 850992 CUCUCGGGGCGGAUUUUUGUUUUUAA 851017
                              ************************** PP

>>

RNAfold
>gi_545778205_gb_U000_200
UAGCGUUGACGUAGGCACCUGGAUUGCCGGUGUUGGUUACCGCUUCUAAU
CACUUUGGUGAUAUAAAAAAUCCGCCUCUCGGGGCGGAUUUUUGUUUUUA
AGGUUUCG
.((((.((((...((((((.((....)))))))).)))).))))....(((((....)))))...((((((((((((....))))))))))))............... (-37.60)

Length sequence

: 108

Length match:

93