gi_545778205_gb_U000_201

cmsearch-Rfam

Family :

ROSE_2

Id:

RF01832

Type:

Cis-reg; thermoregulator;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0040040 thermosensory behavior

Description:

This family represents a 5' UTR cis-regulatory element found in heat shock mRNAs and is known
as the ROSE (repression of heat shock gene expression) element. The ROSE element is a
negative regulator of heat shock gene expression. The secondary structure is thought to be regulated
by temperature. This regulation blocks access to the ribosome binding site under normal conditions. During
heat shock however, the structure changes freeing the ribosome binding site and allowing expression to
occur [1,2]. This family includes predicted members of the family from gamma-proteobacteria.

Score:

100.3

E-value:

1.8e-23

From sequence:

3867488

To sequence:

3867416

Alignments:

                                                                                                         NC
                               :::::::::::<<<<<-<<<_____>>>>>>>>---<<--<<<-<<<____>>>>>>---->>:::::::::: CS
               RF01832       1 ucuGGcuAccUGgCCUGUCCAUgaUGGAAGGcCuuAcaUUCUCGCUGAUUUCAGGAGcUaUugAUUAUGCGUA 73     
                               UCUGGCUACCUG:CCUGUCCAU++UGGAAGG:CUUACAUUCUCGCUGAUUUCAGGAGCUAUUGAUUAUGCGUA
  gi_545778205_gb_U000 3867488 UCUGGCUACCUGACCUGUCCAUUGUGGAAGGUCUUACAUUCUCGCUGAUUUCAGGAGCUAUUGAUUAUGCGUA 3867416
                               ************************************************************************* PP

RNAfold
>gi_545778205_gb_U000_201
ACGCAUAAUCAAUAGCUCCUGAAAUCAGCGAGAAUGUAAGACCUUCCACA
AUGGACAGGUCAGGUAGCCAGA
...............((((((....))).))).......(((((((((...)))).)))))........... (-15.60)

Length sequence

: 72

Length match:

71