gi_545778205_gb_U000_203

cmsearch-Rfam

Family :

rseX

Id:

RF01401

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

96.4

E-value:

7.9e-14

From sequence:

2033649

To sequence:

2033738

Alignments:

                                                                                                                 NC
                               :::::::::::::<<---<<<<<______>>>>>-->>-------------------------------<<<<<<______ CS
               RF01401       1 UUuUUauuaUUauGUGUCAugAUaauucgGUcaUUAGCCUUUUAUCaUcUagUUUauauUUauUuaAUUgCCGGCAuUgAU 81     
                               UUUUUAUUAUU+UGUGUCAU:AU++UUC+GU:AUUAGCCUUUUAUC+UCU+GUUUAUAUUU+UU +   GCCGGCA UGAU
  gi_545778205_gb_U000 2033649 UUUUUAUUAUUCUGUGUCAUGAUGCUUCCGUUAUUAGCCUUUUAUCGUCUUGUUUAUAUUUUUUGG---GCCGGCA-UGAU 2033725
                               ******************************************************************...*******.**** PP

                                             NC
                               >>>>>>::::::: CS
               RF01401      82 GCCGGcUUUUUUU 94     
                               GCCGGCUUUUUUU
  gi_545778205_gb_U000 2033726 GCCGGCUUUUUUU 2033738
                               ************* PP

RNAfold
>gi_545778205_gb_U000_203
CUUUUUAUUAUUCUGUGUCAUGAUGCUUCCGUUAUUAGCCUUUUAUCGUC
UUGUUUAUAUUUUUUGGGCCGGCAUGAUGCCGGCUUUUUUUUA
...................((((((((.........))).....)))))................(((((((((...)))))))))....... (-16.70)

Length sequence

: 93

Length match:

88