gi_545778205_gb_U000_204

cmsearch-Rfam

Family :

rsmX

Id:

RF02144

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

31.3

E-value:

0.0011

From sequence:

4189525

To sequence:

4189619

Alignments:

                                        v             v          vvvv                 vv         vv    vvvv      NC
                               :::::<<<<<<<<<_____>>>>>>>>>~~~~~~(((((((<<<_____>>>,,<<<<<_____>>>>>))))))),,,,, CS
               RF02144       1 AuCAacugggGcgcAGGaagcgCcccag*[14]*GaCCaucGCcaaGaagGCuaccGaCAGGauGuCgggauGGuCuUgga 89     
                                    C:G: ::GC G A GC:: :C:G          :::G::  GA+::C A:++A: G  +:U  ::::+++ +  G 
  gi_545778205_gb_U000 4189525 CCUGGCAGAACUGCUGAACGCAGGUCUG*[ 1]*----GCGGUUCUGAUAACGAGUAAUCGUUAAU--CCGCAAAUAACGU 4189594
                               ******************9999999999...3......5567777777777755555544444444..566666678899* PP

                                                         NC
                               ,,<<<<<<<<____>>>>>>>>::: CS
               RF02144      90 AAaaaCCCGCUUcGGCGGGuuuUUU 114    
                               AAAAACCCGCUUCGGCGGGUUUUUU
  gi_545778205_gb_U000 4189595 AAAAACCCGCUUCGGCGGGUUUUUU 4189619
                               ************************* PP

RNAfold
>gi_545778205_gb_U000_204
AUCUGCCAGCCUGGCAGAACUGCUGAACGCAGGUCUGGGCGGUUCUGAUA
ACGAGUAAUCGUUAAUCCGCAAAUAACGUAAAAACCCGCUUCGGCGGGUU
UUUUUAUGGGGGGA
.(((((((...)))))))((((((.(((....)).).)))))).....((((((....)))))).(((.(..((((...((((((((((....))))))))))))))..).))) (-45.10)

Length sequence

: 114

Length match:

93