gi_545778205_gb_U000_205

cmsearch-Rfam

Family :

RsmY

Id:

RF00195

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

The rsmY gene, like rsmZ (Rfam:RF00166), is regulated by the GacS/GacA signal transduction system in the
plant-beneficial soil bacterium and biocontrol model organism Pseudomonas fluorescens CHA0. GacA/GacS target genes are translationally
repressed by the small RNA binding protein RsmA. RsmY and RsmZ RNAs bind RsmA to
relieve this repression and so enhance secondary metabolism and biocontrol traits [1].

Score:

21.8

E-value:

0.0074

From sequence:

2282820

To sequence:

2282843

Alignments:

                                                        NC
                               <<<<<<<<<<____>>>>>>>>>> CS
               RF00195      98 AaaaCCCCGCuucgGCGGGGuuuU 121    
                               AAAACCCCGCU CGGCGGGGUUUU
  gi_545778205_gb_U000 2282820 AAAACCCCGCUCCGGCGGGGUUUU 2282843
                               ************************ PP

RNAfold
>gi_545778205_gb_U000_205
CUGCAGCACAUCGACUUCGUUCGCGCUUAAUUGCUGAAUAAGUUGUAAAA
AACCCCGCUCCGGCGGGGUUUUUUGUAUCUGCAGAUUAUGCCUGAUUACG
GUAUUGCUAUUUUUUGCAGGC
((((((.....((((((.(((((.((......)))))))))))))(((((((((((((....)))))))))))))...)))))).....(((((.....((((....)))).....))))) (-46.60)

Length sequence

: 121

Length match:

22