gi_545778205_gb_U000_210

cmsearch-Rfam

Family :

RtT

Id:

RF00391

Type:

Cis-reg;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family represents a bacterial cis-regulatory element known as RtT RNA. The exact function of RtT
is unknown although it is thought that it may be involved in changing the cellular
response in relation to amino acid starvation [1].

Score:

131.9

E-value:

5.6e-30

From sequence:

1287019

To sequence:

1286888

Alignments:

                                                                                                                 NC
                               ::::::::::::::(((((((-(---------((-((----((((,,,<<_____.__>>,,,,,,<<<<<<____.>>>> CS
               RF00391       1 uuauuuugcauaugGgGgaGGAUGAgAAcCuUCGaccaAGGUuCGAgucgAGCGa.AGcgAGAaAaCGucGCgucA.GCga 79     
                               +U+ U + CAU+ GGGG:AGGAUGAGAA CUUCGAC:AAGGUUCG +UCGAGCG+ AGCGAGA+A+CGU:GC+ CA GC:A
  gi_545778205_gb_U000 1287019 AUUCUGCCCAUGCGGGGAAGGAUGAGAAGCUUCGACUAAGGUUCGGCUCGAGCGUcAGCGAGAGAGCGUUGCCGCAgGCAA 1286939
                               ********************************************************************************* PP

                                                                                   NC
                               >>,,,))))-))))-------------------)-)))))))::::::::: CS
               RF00391      80 CGgCCCGaAGggCGAGGcgCgaAGcGaCGAgUaAUCCucCcCccaCCACCA 130    
                               CG+CCCGAAG:GCGA+GCGCG+AGCG++GAGUAAUCCU:CCCCCACCACCA
  gi_545778205_gb_U000 1286938 CGACCCGAAGGGCGAAGCGCGCAGCGCUGAGUAAUCCUUCCCCCACCACCA 1286888
                               *************************************************** PP

>>

RNAfold
>gi_545778205_gb_U000_210
GGUGGUGGGGGAAGGAUUACUCAGCGCUGCGCGCUUCGCCCUUCGGGUCG
UUGCCUGCGGCAACGCUCUCUCGCUGACGCUCGAGCCGAACCUUAGUCGA
AGCUUCUCAUCCUUCCCCGCAUGGGCAGAAU
(.(.(((((((((((((.....(((((...)))))..((((...))))(((((((...)))))))..((.(((((((.(.(((...))).).)))).)))))......)))))))))).))).).)..... (-50.40)

Length sequence

: 131

Length match:

130