gi_545778205_gb_U000_211

cmsearch-Rfam

Family :

RtT

Id:

RF00391

Type:

Cis-reg;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family represents a bacterial cis-regulatory element known as RtT RNA. The exact function of RtT
is unknown although it is thought that it may be involved in changing the cellular
response in relation to amino acid starvation [1].

Score:

135.3

E-value:

7.4e-31

From sequence:

1287197

To sequence:

1287066

Alignments:

                                                                                                                 NC
                               ::::::::::::::(((((((-(---------((-((----((((,,,<<_____.__>>,,,,,,<<<<<<____.>>>> CS
               RF00391       1 uuauuuugcauaugGgGgaGGAUGAgAAcCuUCGaccaAGGUuCGAgucgAGCGa.AGcgAGAaAaCGucGCgucA.GCga 79     
                               +U+ U + CAU+ GGGG:AGGAUGAGAA CUUCGACCAAGGUUCGA+UCGAGCG  AGCGAGA+A+CGU:GC+ CA GC:A
  gi_545778205_gb_U000 1287197 AUUCUGCCCAUGCGGGGAAGGAUGAGAAGCUUCGACCAAGGUUCGACUCGAGCGCcAGCGAGAGAGCGUUGCCGCAgGCAA 1287117
                               ********************************************************************************* PP

                                                                                   NC
                               >>,,,))))-))))-------------------)-)))))))::::::::: CS
               RF00391      80 CGgCCCGaAGggCGAGGcgCgaAGcGaCGAgUaAUCCucCcCccaCCACCA 130    
                               CG+CCCGAAGGGCGA+GCGCG+AGCG++GAGUAAUCCU:CCCCCACCACCA
  gi_545778205_gb_U000 1287116 CGACCCGAAGGGCGAAGCGCGCAGCGCUGAGUAAUCCUUCCCCCACCACCA 1287066
                               *************************************************** PP

>>

RNAfold
>gi_545778205_gb_U000_211
GGUGGUGGGGGAAGGAUUACUCAGCGCUGCGCGCUUCGCCCUUCGGGUCG
UUGCCUGCGGCAACGCUCUCUCGCUGGCGCUCGAGUCGAACCUUGGUCGA
AGCUUCUCAUCCUUCCCCGCAUGGGCAGAAU
(.(.(((((((((((((.(((((((((((.(((....((((...))))(((((((...)))))))......)))))))))).)))).(((.(((.....))).)))..)))))))))).))).).)..... (-54.80)

Length sequence

: 131

Length match:

130