gi_545778205_gb_U000_212

cmsearch-Rfam

Family :

RtT

Id:

RF00391

Type:

Cis-reg;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family represents a bacterial cis-regulatory element known as RtT RNA. The exact function of RtT
is unknown although it is thought that it may be involved in changing the cellular
response in relation to amino acid starvation [1].

Score:

131.2

E-value:

8.6e-30

From sequence:

1287494

To sequence:

1287363

Alignments:

                                                                                                                 NC
                               ::::::::::::::(((((((-(---------((-((----((((,,,<<_____.__>>,,,,,,<<<<<<____.>>>> CS
               RF00391       1 uuauuuugcauaugGgGgaGGAUGAgAAcCuUCGaccaAGGUuCGAgucgAGCGa.AGcgAGAaAaCGucGCgucA.GCga 79     
                                U+U ++ + +  GGGG:AGG UGAGAACCUUC:AC:AAGGUUCGA UCGAGCGA AGCGAGA+AACGU:GC++CA GC:A
  gi_545778205_gb_U000 1287494 GUUUGCACUCAUCGGGGAAGGGUGAGAACCUUCGACUAAGGUUCGAUUCGAGCGAaAGCGAGAGAACGUUGCCACAgGCAA 1287414
                               ********************************************************************************* PP

                                                                                   NC
                               >>,,,))))-))))-------------------)-)))))))::::::::: CS
               RF00391      80 CGgCCCGaAGggCGAGGcgCgaAGcGaCGAgUaAUCCucCcCccaCCACCA 130    
                               CGGCCCGAAG:G:GAGG+GCGAAGCGACGA+UAAUCCU:CCCCCACCACCA
  gi_545778205_gb_U000 1287413 CGGCCCGAAGGGUGAGGAGCGAAGCGACGAAUAAUCCUUCCCCCACCACCA 1287363
                               *************************************************** PP

>>

RNAfold
>gi_545778205_gb_U000_212
GGUGGUGGGGGAAGGAUUAUUCGUCGCUUCGCUCCUCACCCUUCGGGCCG
UUGCCUGUGGCAACGUUCUCUCGCUUUCGCUCGAAUCGAACCUUAGUCGA
AGGUUCUCACCCUUCCCCGAUGAGUGCAAAC
(((((.(((((((((((.....))).)))).))))))))).((((((((((((((...))))))).............)))))))..(((((((.....))))))).(((.(.((...)).).)))..... (-42.40)

Length sequence

: 131

Length match:

130