gi_545778205_gb_U000_222

cmsearch-Rfam

Family :

RybB

Id:

RF00110

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This ncRNA was identified in a large scale screen of E. coli [1]. The function of
this short RNA is unknown. The exact 5' and 3' ends of this RNA are
uncertain.

Score:

105.1

E-value:

3.2e-22

From sequence:

888054

To sequence:

887976

Alignments:

                                                                                                              NC
                              :::::::::::::::::::::::::::::::<<<<<<<<<<<<_________________>>>>>>>>>>>>::::::: CS
               RF00110      1 ACUGCUUUUCUUUGAUGUCCCCAUuUUGaGGAgCCCgccaguCCCGCCuUUUaGGUUCAAGacuggcGGGuUUUUUuUU 79    
                              ACUGCUUUUCUUUGAUGUCCCCAUUUUG+GGAGCCC::CA::CCCGCC+UUU GGUUCAAG::UG::GGGUUUUUU UU
  gi_545778205_gb_U000 888054 ACUGCUUUUCUUUGAUGUCCCCAUUUUGUGGAGCCCAUCAACCCCGCCAUUUCGGUUCAAGGUUGAUGGGUUUUUUGUU 887976
                              ******************************************************************************* PP

RNAfold
>gi_545778205_gb_U000_222
ACAAAAAACCCAUCAACCUUGAACCGAAAUGGCGGGGUUGAUGGGCUCCA
CAAAAUGGGGACAUCAAAGAAAAGCAGU
........(((((((((((((..((.....)))))))))))))))(((((.....))))).................. (-27.30)

Length sequence

: 78

Length match:

77