gi_545778205_gb_U000_223

cmsearch-Rfam

Family :

rydB

Id:

RF00118

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family consists of several bacterial sequences from E. coli, Shigella flexneri and Salmonella species. This
RNA gene was discovered by an RNA screen [1] between the ydiC and ydiH in
E. coli. This gene is only 67 bases in length and is composed of a
hairpin like structure. The function of this RNA is unknown.

Score:

79.2

E-value:

1.5e-18

From sequence:

1764768

To sequence:

1764708

Alignments:

                                                                                              NC
                               :((((,,,,,,,<<<____________>>>,<<<<-<_____>->>>>,,)))):::::::: CS
               RF00118       1 GCCCCUUcaAGAGCUAAgcCcaaugUGAGUGCCGGAGAUAAGCGCCGGgUGGGGcaaAauuu 62     
                               GCCCCUUCAAGAGCUAAGCC A UG GAGUGCCGGAGAUAAGCGCCGG+UGGGG+A AA+ +
  gi_545778205_gb_U000 1764768 GCCCCUUCAAGAGCUAAGCC-ACUGAGAGUGCCGGAGAUAAGCGCCGGAUGGGGUAGAAACC 1764708
                               ********************.***************************************** PP

RNAfold
>gi_545778205_gb_U000_223
GGUUUCUACCCCAUCCGGCGCUUAUCUCCGGCACUCUCAGUGGCUUAGCU
CUUGAAGGGGCG
........((((.((.((.(((.......(.((((...)))).)..))).)).)).)))).. (-16.30)

Length sequence

: 62

Length match:

59