gi_545778205_gb_U000_225

cmsearch-Rfam

Family :

RyeB

Id:

RF00111

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This ncRNA was identified in a large scale screen of E. coli [1]. The exact 5'
and 3' ends of this RNA are uncertain. This RNA overlaps RFAM:RF00101 on the opposite
strand suggesting that the two may act in a concerted manner.

Score:

114.3

E-value:

3.7e-23

From sequence:

1923203

To sequence:

1923104

Alignments:

                                                                                                                 NC
                               :<<<______>>>,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<______>>>>>>--------<<<<<<<<<<<_____ CS
               RF00111       1 aggcaAuuaAgccuacauuaAUgccAACuuuUAGCGCACGGCUCUuUcccAAGAGCCAUUuCCCUaGgCCgaauacAGGAA 81     
                               AGGCAA UAAGCCU+CAUUAAUGCCAACUUUUAGCGCACGGCUCU+UCCCAAGAGCCAUUUCCCU:G:CCGAA ACAGGAA
  gi_545778205_gb_U000 1923203 AGGCAACUAAGCCUGCAUUAAUGCCAACUUUUAGCGCACGGCUCUCUCCCAAGAGCCAUUUCCCUGGACCGAAUACAGGAA 1923123
                               ********************************************************************************* PP

                                                   NC
                               __>>>>>>>>>>>:::::: CS
               RF00111      82 UcguauucGGcCuUUUUUU 100    
                               UCGU UUCGG:C: UUUUU
  gi_545778205_gb_U000 1923122 UCGUGUUCGGUCUCUUUUU 1923104
                               ******************* PP

RNAfold
>gi_545778205_gb_U000_225
AAAAGAGACCGAACACGAUUCCUGUAUUCGGUCCAGGGAAAUGGCUCUUG
GGAGAGAGCCGUGCGCUAAAAGUUGGCAUUAAUGCAGGCUUAGUUGCCU
......(((((((.(((.....))).))))))).((.(..(((((((((....))))))))).).))........(((....)))((((......)))) (-33.50)

Length sequence

: 99

Length match:

98