gi_545778205_gb_U000_230

cmsearch-Rfam

Family :

sau-50

Id:

RF02391

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

37.7

E-value:

7e-05

From sequence:

1795309

To sequence:

1795462

Alignments:

                                     v  vvv    v       v                       vvvv   v        vv     vv     v v NC
                               ::::::(--((((-((((((((((((,,,,,,,,,,,,,,,,,,,<<<<<<<--<<<<------<<~~~~~>>--->>>>> CS
               RF02391       1 UGAAuGcaGgaacUuuucuugCugggAUUUugAUuUCUUCaCCaGUuugcgGGUUaCGgCCuuUaC*[9]*GuUcaCGuAC 85     
                               UGAA G      C :: C::GCUG :AU   +AU UC UC CC GUU:    GUU CG+CC +          UCACG A 
  gi_545778205_gb_U000 1795309 UGAAGGUCACCACGCGCCGUGCUGUAAUGGGAAUAUCCUCGCCCGUUUUCGGGUUACGUCCCGGGC*[9]*UAUCACGCAG 1795393
                               *************************************************************99865..5..55788***** PP

                               vvv           vv                      vv    v         v   vvv  v       NC
                               >>>>>>,,,,,,<<<<________________......>>>>,)))--)))))))))))))--):::::  CS
               RF02391      86 ugcaaAggUaCCgAaaCCgAucAaUUGaACuU......uuUcacccUUaGcaagaaaguucuugauuga  149    
                                  :AAG+UACC:A  CC+   A+UU  AC U        U:+: C  AGC::G ::G   U  +  +A 
  gi_545778205_gb_U000 1795394 AUCGAAGUUACCAAAACCAGAGAGUUUCACCUguucgcCGUUUUCCAGAGCGCGACGGAUCUCUUCGAA  1795463
                               *******************************94444442222366666*********************  PP

>>

RNAfold
>gi_545778205_gb_U000_230
GAAGGUCACCACGCGCCGUGCUGUAAUGGGAAUAUCCUCGCCCGUUUUCG
GGUUACGUCCCGGGCGUUGAUUCUUAUCACGCAGAUCGAAGUUACCAAAA
CCAGAGAGUUUCACCUGUUCGCCGUUUUCCAGAGCGCGACGGAUCUCUUC
GAA
(((((...((.(((((((..((((.((((((..(((..((((((....((.....))...))))))..)))))))))...))))..))........(((((..(((((......)).)))...))))).....)))))..))...)))))... (-40.60)

Length sequence

: 153

Length match:

152