gi_545778205_gb_U000_232

cmsearch-Rfam

Family :

sau-50

Id:

RF02391

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

80.8

E-value:

4.2e-15

From sequence:

461688

To sequence:

461544

Alignments:

                                         vv   v v  vv v                     v   v    v        v  v     v  v     v NC
                              ::::::(--((((-((((((((((((,,,,,,,,,,,,,,,,,,,<<<<<<<--<<<<------<<<<<___>>>>>--->>> CS
               RF02391      1 UGAAuGcaGgaacUuuucuugCugggAUUUugAUuUCUUCaCCaGUuugcgGGUUaCGgCCuuUaCGuGCaGCaCGuUcaCGu 83    
                               GAA  : G::  U:U : :GC+: GAU  UGAU UCUU ACC GU UGC GGUU ::GCC +U CG GCAGC CG UC :: 
  gi_545778205_gb_U000 461688 GGAAGCUCGGUACUUUAGCAGCAGCGAUGGUGAUCUCUUUACCGGUCUGCGGGUUGCGGCCAGUACGGGCAGCACGCUCUUUA 461606
                              *********************************************************************************** PP

                                v   v         vv                vv    v   vv  v v  vv           NC
                              >>>>>>>>,,,,,,<<<<________________>>>>,)))--)))))))))))))--)::::: CS
               RF02391     84 ACugcaaAggUaCCgAaaCCgAucAaUUGaACuUuuUcacccUUaGcaagaaaguucuugauuga 148   
                              AC GCA A+GUACC:A  CC A+CA+U  +AC U  U: C :U   C: : A:  ::U : UU+ 
  gi_545778205_gb_U000 461605 ACGGCAAAAGUACCAAAACCUACCAGUGCUACAUCAUCCCCUU---CUUUCAGAGAUUCAGUUAC 461544
                              *************************************987765...444455566799999**** PP

>>

RNAfold
>gi_545778205_gb_U000_232
CGUAACUGAAUCUCUGAAAGAAGGGGAUGAUGUAGCACUGGUAGGUUUUG
GUACUUUUGCCGUUAAAGAGCGUGCUGCCCGUACUGGCCGCAACCCGCAG
ACCGGUAAAGAGAUCACCAUCGCUGCUGCUAAAGUACCGAGCUUCCGU
.((.((...((((((.......))))))...)).))..(((.((((((.((((((((.((.((....((..(((.......(((((((.((.....)).).)))))).......)))..))...)).)).))))))))))))))))). (-41.10)

Length sequence

: 148

Length match:

143