Alignments: vv v v v vvvv v vv v v v v NC
::::::(--((((-((((((((((((,,,,,,,,,,,,,,,,,,,<<<<<<<--<<<<------<<<<<___>>>>>--->>> CS
RF02391 1 UGAAuGcaGgaacUuuucuugCugggAUUUugAUuUCUUCaCCaGUuugcgGGUUaCGgCCuuUaCGuGCaGCaCGuUcaCGu 83
U+AA :AG AC U U: : C A UU+ A UU UC CCAGU ::C +UU C:+CC +U CG:G +GC:CG U +:G
gi_545778205_gb_U000 964068 UAAAGUGAGGAACGUAUUUUCCUUCCAGUUCUACUUUAUCGCCAGUCUUCGGAUUACGUCCGGUACGUGGUGCGCGGUAGUGC 963986
*********************************************************************************** PP
vv v vv vv vvv v v v v vv NC
>>>>>>>>,,,,,,<<<<________________>>>>,)))--)))))))))))))--.)::::: CS
RF02391 84 ACugcaaAggUaCCgAaaCCgAucAaUUGaACuUuuUcacccUUaGcaagaaaguucuu.gauuga 148
A G:: A+ U CCGA CCG A UU AA UC G : :A AGU : U++
gi_545778205_gb_U000 963985 AAAGAGAAACUGCCGAAACCGCGGAUUUCAAUACGCUCGCCC--UGCGCAAGAGUCGAGgCCAUAU 963922
**************************************7555..4555556678877556999999 PP
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