gi_545778205_gb_U000_234

cmsearch-Rfam

Family :

SECIS_2

Id:

RF01988

Type:

Cis-reg;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0001514 selenocysteine incorporation

Description:

not description

Score:

28.8

E-value:

0.0025

From sequence:

1547981

To sequence:

1548035

Alignments:

                                             v vv   v            v   vv v               NC
                               <<<<<--<<-<<<<<-<<-<<<-<<<____.>>>>>>->>->>>>>>>--->>>>> CS
               RF01988       1 GcGUCUGACACGGCCCauCGGuUGCaGGUC.uGCaCCaauCGGUCGGUAAuGGCgC 55     
                               GC UCUGACAC G: CA CGG  GCA GUC UGC CCA  C :U GGU  +GG GC
  gi_545778205_gb_U000 1547981 GCGUCUGACACGGACCAACGGUAGCAAGUCuUGCUCCAA-CAUUUGGUCGCGGUGC 1548035
                               ****************************9868*****94.9*************** PP

>>

RNAfold
>gi_545778205_gb_U000_234
CGUCUGACACGGACCAACGGUAGCAAGUCUUGCUCCAACAUUUGGUCGCG
GUGC
......((.((((((((.((.(((((...))))))).....)))))).)))).. (-14.20)

Length sequence

: 54

Length match:

53