gi_545778205_gb_U000_235

cmsearch-Rfam

Family :

SECIS_2

Id:

RF01988

Type:

Cis-reg;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0001514 selenocysteine incorporation

Description:

not description

Score:

28.1

E-value:

0.0038

From sequence:

4085242

To sequence:

4085188

Alignments:

                                             v vv   v            v   vv v               NC
                               <<<<<--<<-<<<<<-<<-<<<-<<<____.>>>>>>->>->>>>>>>--->>>>> CS
               RF01988       1 GcGUCUGACACGGCCCauCGGuUGCaGGUC.uGCaCCaauCGGUCGGUAAuGGCgC 55     
                               G: UCUGACAC G: CA CGG  GCA GUC UGC CCA  C :U GGU  +GG :C
  gi_545778205_gb_U000 4085242 GUGUCUGACACGGACCAACGGUAGCAAGUCuUGCUCCAA-CAUUUGGUCGCGGUGC 4085188
                               ****************************9868*****94.9*************** PP

RNAfold
>gi_545778205_gb_U000_235
CACCGCGACCAAAUGUUGGAGCAAGACUUGCUACCGUUGGUCCGUGUCAG
ACAC
.((((.((((((....((((((((...))))).))))))))))).))....... (-16.00)

Length sequence

: 54

Length match:

53