gi_545778205_gb_U000_236

cmsearch-Rfam

Family :

SECIS_2

Id:

RF01988

Type:

Cis-reg;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0001514 selenocysteine incorporation

Description:

not description

Score:

87.1

E-value:

3.1e-19

From sequence:

4298954

To sequence:

4298900

Alignments:

                                                                                       NC
                               <<<<<--<<-<<<<<-<<-<<<-<<<____>>>>>>->>->>>>>>>--->>>>> CS
               RF01988       1 GcGUCUGACACGGCCCauCGGuUGCaGGUCuGCaCCaauCGGUCGGUAAuGGCgC 55     
                               G:GUCUGACACGGCCCAUCGGUUGCAGGUCUGCACCAAUCGGUCGGUAAUGGC:C
  gi_545778205_gb_U000 4298954 GUGUCUGACACGGCCCAUCGGUUGCAGGUCUGCACCAAUCGGUCGGUAAUGGCGC 4298900
                               ******************************************************* PP

>>

RNAfold
>gi_545778205_gb_U000_236
CGCCAUUACCGACCGAUUGGUGCAGACCUGCAACCGAUGGGCCGUGUCAG
ACAC
.......((((.((.(((((((((....))).)))))).)).)).))....... (-16.60)

Length sequence

: 54

Length match:

53