gi_545778205_gb_U000_238

cmsearch-Rfam

Family :

SECIS_3

Id:

RF01989

Type:

Cis-reg;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0001514 selenocysteine incorporation

Description:

not description

Score:

84.3

E-value:

2.4e-20

From sequence:

4085240

To sequence:

4085182

Alignments:

                                                                                           NC
                               ::::::<<<<<<<-<<-<<-<<<<<___>>>>>>>----->>>>>>>>>:::::::::: CS
               RF01989       1 GUCUGACaCGgcCCaACGGUgGCcAGUCUgGCcCCaACaUUuGgcCGuGGuGCgAUGAC 59     
                               GUCUGAC:CG::CCAACGGU:GC:AGUCU:GC:CCAACAUUUG::CG:GGUGCGAUGAC
  gi_545778205_gb_U000 4085240 GUCUGACACGGACCAACGGUAGCAAGUCUUGCUCCAACAUUUGGUCGCGGUGCGAUGAC 4085182
                               *********************************************************** PP

>>

RNAfold
>gi_545778205_gb_U000_238
UCAUCGCACCGCGACCAAAUGUUGGAGCAAGACUUGCUACCGUUGGUCCG
UGUCAGAC
.....((((.(.((((((....((((((((...))))).))))))))))))))..... (-17.30)

Length sequence

: 58

Length match:

57