gi_545778205_gb_U000_239

cmsearch-Rfam

Family :

SECIS_3

Id:

RF01989

Type:

Cis-reg;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0001514 selenocysteine incorporation

Description:

not description

Score:

35.8

E-value:

3.9e-06

From sequence:

4298952

To sequence:

4298894

Alignments:

                                       vv    vv                         vv   vv             NC
                               ::::::<<<<<<<-<<-<<-<<<<<___>>>>>>>--.--->>>>>>>>>:::::::::: CS
               RF01989       1 GUCUGACaCGgcCCaACGGUgGCcAGUCUgGCcCCaA.CaUUuGgcCGuGGuGCgAUGAC 59     
                               GUCUGACA  :CCC  CGGU:GC::GU ::GC:CCAA C+   GG:  UGG GC AUGA 
  gi_545778205_gb_U000 4298952 GUCUGACACGGCCCAUCGGUUGCAGGU-CUGCACCAAuCGGUCGGUAAUGGCGCAAUGAG 4298894
                               **************************9.79*****9835556699999************ PP

RNAfold
>gi_545778205_gb_U000_239
UCAUUGCGCCAUUACCGACCGAUUGGUGCAGACCUGCAACCGAUGGGCCG
UGUCAGAC
.............((((.((.(((((((((....))).)))))).)).)).))..... (-16.60)

Length sequence

: 58

Length match:

57