gi_545778205_gb_U000_241

cmsearch-Rfam

Family :

SIB_RNA

Id:

RF00113

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0003729 mRNA binding

Description:

This family contains multiple ncRNA from E. coli that were identified in a large scale screen
of E. coli, were they were called candidates 43,55 and 61 [1]. These RNAs have
also been identified by other groups and called QUAD RNAs.

Score:

148.7

E-value:

2.8e-33

From sequence:

2153275

To sequence:

2153423

Alignments:

                                                                                                                 NC
                               ::::::::::::::::::::::::::::::((((--((((((,,<<<..____________>>>,<<<<____________ CS
               RF00113       1 UUGACAuuguuguUuuuuuGACcUAAuuUcAGGAgUaAGGGuaAGGg..aGGaUuuCuCCucCCuCUGguuguCUUAgUAa 79     
                               UUGACA U++ G +    UGAC+UAAUUUCAGGAGU:AGGGU AGGG  AGG UU C+CCUCCC+CUGGU  UCUUAGUAA
  gi_545778205_gb_U000 2153275 UUGACACUAAGGGCGGAGUGACAUAAUUUCAGGAGUGAGGGUUAGGGagAGGUUUCCCCCUCCCCCUGGUGUUCUUAGUAA 2153355
                               ********************************************99976678888888888******************** PP

                                                                                                    NC
                               ____________________________>>>><<<<<<<________>>>>>>>)))))))))):::: CS
               RF00113      80 GCuggGaAaCUuAUgAgUAAcAGuAcaAcCAGuAUGAUGAcuaguuuCAUCAUaaCCCUuUCCUUaUu 147    
                               GC  GGAA+CU+AU+A+UAA+AGUA+ ACCAGUAUGAUGAC +G+UUCAUCAUAACCCU:UCCUUAUU
  gi_545778205_gb_U000 2153356 GCCUGGAAGCUAAUCACUAAGAGUAUCACCAGUAUGAUGACGUGCUUCAUCAUAACCCUUUCCUUAUU 2153423
                               ******************************************************************** PP

>>

RNAfold
>gi_545778205_gb_U000_241
UGACACUAAGGGCGGAGUGACAUAAUUUCAGGAGUGAGGGUUAGGGAGAG
GUUUCCCCCUCCCCCUGGUGUUCUUAGUAAGCCUGGAAGCUAAUCACUAA
GAGUAUCACCAGUAUGAUGACGUGCUUCAUCAUAACCCUUUCCUUAUU
...((((........))))..........((((..((((((..(((((.((....)).))))).((((((((((((((.(((......)))....))))))))...))))))((((((((......)))))))))))))))))).... (-49.40)

Length sequence

: 148

Length match:

147