gi_545778205_gb_U000_242

cmsearch-Rfam

Family :

SIB_RNA

Id:

RF00113

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0003729 mRNA binding

Description:

This family contains multiple ncRNA from E. coli that were identified in a large scale screen
of E. coli, were they were called candidates 43,55 and 61 [1]. These RNAs have
also been identified by other groups and called QUAD RNAs.

Score:

138.7

E-value:

8.9e-31

From sequence:

2153610

To sequence:

2153752

Alignments:

                                                                           v                v v                  NC
                               ::::::::::::::::::::::::::::::((((--((((((,,<<<____________>>>,<<<<______________ CS
               RF00113       1 UUGACAuuguuguUuuuuuGACcUAAuuUcAGGAgUaAGGGuaAGGgaGGaUuuCuCCucCCuCUGguuguCUUAgUAaGC 81     
                               UUGACA+U UU+U+ U + G C+UA UUUCAGGAGU:AGGGUA  G: GG+UUUC+CC+:C + UGGU+GUCUUAGUAAGC
  gi_545778205_gb_U000 2153610 UUGACAAUCUUAUCGUGAAGGCAUACUUUCAGGAGUGAGGGUAGAGCGGGGUUUCCCCCGCCC-UGGUAGUCUUAGUAAGC 2153689
                               ***************************************************************.***************** PP

                                                            v                                     NC
                               __________________________>>>><<<<<<<________>>>>>>>)))))))))):::: CS
               RF00113      82 uggGaAaCUuAUgAgUAAcAGuAcaAcCAGuAUGAUGAcuaguuuCAUCAUaaCCCUuUCCUUaUu 147    
                                GGGAA+CUUAUGA+UAA+AG+A   CCA+:AUGAUGA UAG+UUCAUCAU:ACCCU:UCCUUAUU
  gi_545778205_gb_U000 2153690 GGGGAAGCUUAUGACUAAGAGCA---CCACGAUGAUGAGUAGCUUCAUCAUGACCCUUUCCUUAUU 2153752
                               ***********************...**************************************** PP

>>

RNAfold
>gi_545778205_gb_U000_242
AUUGACAAUCUUAUCGUGAAGGCAUACUUUCAGGAGUGAGGGUAGAGCGG
GGUUUCCCCCGCCCUGGUAGUCUUAGUAAGCGGGGAAGCUUAUGACUAAG
AGCACCACGAUGAUGAGUAGCUUCAUCAUGACCCUUUCCUUAUUUA
.............((.((((((....)))))).))(.((((((...((((((....))))))..((((..(((((((((((......))))...)))))))..))))..((((((((....)))))))).)))))).)........ (-51.80)

Length sequence

: 146

Length match:

141