gi_545778205_gb_U000_243

cmsearch-Rfam

Family :

SIB_RNA

Id:

RF00113

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0003729 mRNA binding

Description:

This family contains multiple ncRNA from E. coli that were identified in a large scale screen
of E. coli, were they were called candidates 43,55 and 61 [1]. These RNAs have
also been identified by other groups and called QUAD RNAs.

Score:

136.1

E-value:

3.8e-30

From sequence:

3056815

To sequence:

3056965

Alignments:

                                                                                                                 NC
                               ::::::::::::::::::::::::::::::((.((--((((((,,<<<____________>>>,.....<<<<________ CS
               RF00113       1 UUGACAuuguuguUuuuuuGACcUAAuuUcAG.GAgUaAGGGuaAGGgaGGaUuuCuCCucCCu.....CUGguuguCUUA 75     
                               UUGACAU+GUUG+UU UUUGACCUAAUUU AG GAGUAAGGGUAAGGGAGGAUU CUCCUCCC+     CUG:+UGU  UA
  gi_545778205_gb_U000 3056815 UUGACAUCGUUGAUUCUUUGACCUAAUUU-AGuGAGUAAGGGUAAGGGAGGAUUGCUCCUCCCCugagaCUGACUGU--UA 3056892
                               ****************************9.999***************************77766888888888888..** PP

                                                                                                         NC
                               ________________________________>>>><<<<<<<________>>>>>>>)))))).)))):::: CS
               RF00113      76 gUAaGCuggGaAaCUuAUgAgUAAcAGuAcaAcCAGuAUGAUGAcuaguuuCAUCAUaaCCCUu.UCCUUaUu 147    
                               +UAAGC   GAAACUUAUGAGUAACAGUACAA:CAGUAUGAUGAC+AGU+ CAUCAUAACCCUU UCCUU  +
  gi_545778205_gb_U000 3056893 AUAAGCGCUGAAACUUAUGAGUAACAGUACAAUCAGUAUGAUGACAAGUCGCAUCAUAACCCUUcUCCUUCAA 3056965
                               ************************************************************************* PP

>>

RNAfold
>gi_545778205_gb_U000_243
UGACAUCGUUGAUUCUUUGACCUAAUUUAGUGAGUAAGGGUAAGGGAGGA
UUGCUCCUCCCCUGAGACUGACUGUUAAUAAGCGCUGAAACUUAUGAGUA
ACAGUACAAUCAGUAUGAUGACAAGUCGCAUCAUAACCCUUCUCCUUCAA
.......(((((....))))).......((.(((.((((((..(((((((....)))))))((((.....((((((((((((........)))))...)))))))....))))(((((((........)))))))))))))))))).... (-44.10)

Length sequence

: 150

Length match:

149