gi_545778205_gb_U000_244

cmsearch-Rfam

Family :

SIB_RNA

Id:

RF00113

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0003729 mRNA binding

Description:

This family contains multiple ncRNA from E. coli that were identified in a large scale screen
of E. coli, were they were called candidates 43,55 and 61 [1]. These RNAs have
also been identified by other groups and called QUAD RNAs.

Score:

147.9

E-value:

4.5e-33

From sequence:

3194900

To sequence:

3194751

Alignments:

                                                                                                                 NC
                               ::::::::::::::::::::::::::::::.((((--((((((,,<<<____________>>>,<<<<______.._____ CS
               RF00113       1 UUGACAuuguuguUuuuuuGACcUAAuuUc.AGGAgUaAGGGuaAGGgaGGaUuuCuCCucCCuCUGguuguCU..UAgUA 78     
                               UUGAC  UG+U UUUUUU +ACCUAA+ U+ AGGA+ AAGGGU AGGGAGGAUUUCUCC+CCCUCUG:UUG CU  UA+UA
  gi_545778205_gb_U000 3194900 UUGACGCUGAUUUUUUUUCAACCUAAAGUAaAGGAACAAGGGUGAGGGAGGAUUUCUCCCCCCUCUGAUUGGCUguUAAUA 3194820
                               ********************************************************************************* PP

                                                                                                     NC
                               _____________________________>>>><<<<<<<________>>>>>>>)))))))))):::: CS
               RF00113      79 aGCuggGaAaCUuAUgAgUAAcAGuAcaAcCAGuAUGAUGAcuaguuuCAUCAUaaCCCUuUCCUUaUu 147    
                               AGCUG GAAACUUA GAGUAACA +ACAA:CAGUAUGAUGAC AG+UUCAUCAUAACCCUUUCCUU U 
  gi_545778205_gb_U000 3194819 AGCUGCGAAACUUACGAGUAACAACACAAUCAGUAUGAUGACGAGCUUCAUCAUAACCCUUUCCUUCUG 3194751
                               ********************************************************************* PP

>>

RNAfold
>gi_545778205_gb_U000_244
AGAAGGAAAGGGUUAUGAUGAAGCUCGUCAUCAUACUGAUUGUGUUGUUA
CUCGUAAGUUUCGCAGCUUAUUAACAGCCAAUCAGAGGGGGGAGAAAUCC
UCCCUCACCCUUGUUCCUUUACUUUAGGUUGAAAAAAAAUCAGCGUCAA
.((((((((((((((((((((......))))))))(((((((.(((((((...(((((((....)))))))))))))))))))))((((((((....)))))))).)))))..))))))).....(.(((((.......))))).)... (-57.90)

Length sequence

: 149

Length match:

148