gi_545778205_gb_U000_245

cmsearch-Rfam

Family :

SIB_RNA

Id:

RF00113

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0003729 mRNA binding

Description:

This family contains multiple ncRNA from E. coli that were identified in a large scale screen
of E. coli, were they were called candidates 43,55 and 61 [1]. These RNAs have
also been identified by other groups and called QUAD RNAs.

Score:

31.4

E-value:

0.00044

From sequence:

3195100

To sequence:

3195248

Alignments:

                                                                                                                 NC
                               ::::::::::::::::::::::::::::::((((--((((((,,<<<____________>>>,.<<<<______......_ CS
               RF00113       1 UUGACAuuguuguUuuuuuGACcUAAuuUcAGGAgUaAGGGuaAGGgaGGaUuuCuCCucCCu.CUGguuguCU......U 74     
                                 G C  U   G+      G CCU  U U+AGGA  AAGGGU A G: G A  UC  C :C U CUG UUGU U      U
  gi_545778205_gb_U000 3195100 AAGCCCCUCCCGAAGAAGGGGCCUUGUAUAAGGA--AAGGGUUAUGAUGAAGCUCGUCAUCAUaCUGGUUGUGUuguuacU 3195178
                               **********************************..********************************9999887776667 PP

                                                                                                           NC
                               _________________________________>>>><<<<<<<________>>>>>>>))))))..)))):::: CS
               RF00113      75 AgUAaGCuggGaAaCUuAUgAgUAAcAGuAcaAcCAGuAUGAUGAcuaguuuCAUCAUaaCCCUu..UCCUUaUu 147    
                                 UAAG U     ACUUA  A  AA   + + A CAG: :G: GA +A+U  C :C: :ACCCUU  UCCUU+  
  gi_545778205_gb_U000 3195179 GUUAAGUUUCCCGACUUACUAACAA---C-UCAUCAGAGGGGGGAGAAAU-CCUCCCUUACCCUUguUCCUUUAC 3195248
                               7788888888888887766555555...4.567****9999999987765.5999999***************** PP

>>

RNAfold
>gi_545778205_gb_U000_245
AGCCCCUCCCGAAGAAGGGGCCUUGUAUAAGGAAAGGGUUAUGAUGAAGC
UCGUCAUCAUACUGGUUGUGUUGUUACUGUUAAGUUUCCCGACUUACUAA
CAACUCAUCAGAGGGGGGAGAAAUCCUCCCUUACCCUUGUUCCUUUAC
.((((((........))))))...(((.(((((((((((((((((((......))))))))(((((.(.(((((((..((.(((((....)))))))))))))).))))))((((((((....)))))))).)))))..))))))))) (-59.20)

Length sequence

: 148

Length match:

147