gi_545778205_gb_U000_246

cmsearch-Rfam

Family :

SIB_RNA

Id:

RF00113

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0003729 mRNA binding

Description:

This family contains multiple ncRNA from E. coli that were identified in a large scale screen
of E. coli, were they were called candidates 43,55 and 61 [1]. These RNAs have
also been identified by other groups and called QUAD RNAs.

Score:

142.0

E-value:

1.3e-31

From sequence:

3195275

To sequence:

3195126

Alignments:

                                                                                                  v              NC
                               ::::::::::::::::::::::::::::::.((((--((((((,,<<<____________>>>,<<<<______.._____ CS
               RF00113       1 UUGACAuuguuguUuuuuuGACcUAAuuUc.AGGAgUaAGGGuaAGGgaGGaUuuCuCCucCCuCUGguuguCU..UAgUA 78     
                               UUGAC  UGUUGUUUUUU +ACCUA + U+ AGGA+ AAGGGUAAGGGAGGAUUUCUCC+CCCUCUG U    U  UAGUA
  gi_545778205_gb_U000 3195275 UUGACGCUGUUGUUUUUUCAACCUAGAGUAaAGGAACAAGGGUAAGGGAGGAUUUCUCCCCCCUCUGAUGAGUUguUAGUA 3195195
                               ********************************************************************98888888***** PP

                                                            v                                        NC
                               _____________________________>>>><<<<<<<________>>>>>>>)))))))))):::: CS
               RF00113      79 aGCuggGaAaCUuAUgAgUAAcAGuAcaAcCAGuAUGAUGAcuaguuuCAUCAUaaCCCUuUCCUUaUu 147    
                               AG  GGGAAACUUA +AGUAACA +ACAA CAGUAUGAUGAC AG+UUCAUCAUAACCCUUUCCUUAU+
  gi_545778205_gb_U000 3195194 AGUCGGGAAACUUAACAGUAACAACACAACCAGUAUGAUGACGAGCUUCAUCAUAACCCUUUCCUUAUA 3195126
                               ********************************************************************* PP

>>

RNAfold
>gi_545778205_gb_U000_246
AUAAGGAAAGGGUUAUGAUGAAGCUCGUCAUCAUACUGGUUGUGUUGUUA
CUGUUAAGUUUCCCGACUUACUAACAACUCAUCAGAGGGGGGAGAAAUCC
UCCCUUACCCUUGUUCCUUUACUCUAGGUUGAAAAAACAACAGCGUCAA
..(((((((((((((((((((......))))))))(((((.(.(((((((..((.(((((....)))))))))))))).))))))((((((((....)))))))).)))))..))))))........((((......))))........ (-49.70)

Length sequence

: 149

Length match:

148