gi_545778205_gb_U000_247

cmsearch-Rfam

Family :

SIB_RNA

Id:

RF00113

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0003729 mRNA binding

Description:

This family contains multiple ncRNA from E. coli that were identified in a large scale screen
of E. coli, were they were called candidates 43,55 and 61 [1]. These RNAs have
also been identified by other groups and called QUAD RNAs.

Score:

30.0

E-value:

0.00098

From sequence:

3194755

To sequence:

3194871

Alignments:

                                                                                                                 NC
                               ((((--((((((,,<<<____________>>>,.<<<<______......_______________________________ CS
               RF00113      31 AGGAgUaAGGGuaAGGgaGGaUuuCuCCucCCu.CUGguuguCU......UAgUAaGCuggGaAaCUuAUgAgUAAcAGuA 104    
                               AGGA  AAGGGU A G: G A  UC  C :C U CUG:UUGU U      U GUAAG U  G A+CUUAU   UAACAG+ 
  gi_545778205_gb_U000 3194755 AGGA--AAGGGUUAUGAUGAAGCUCGUCAUCAUaCUGAUUGUGUuguuacUCGUAAGUUUCGCAGCUUAU---UAACAGC- 3194829
                               ****..****************************9***99988888888899**************9976...6788887. PP

                                      v                    v               NC
                               ___>>>><<<<<<<________>>>>>>>))))))..)))):: CS
               RF00113     105 caAcCAGuAUGAUGAcuaguuuCAUCAUaaCCCUu..UCCUUa 145    
                               CAA:CAG  :G: GA  A+ U C :C:  ACCCUU  UCCUU+
  gi_545778205_gb_U000 3194830 CAAUCAGAGGGGGGA-GAAAUCCUCCCUCACCCUUguUCCUUU 3194871
                               588***755555555.5566679999999************** PP

RNAfold
>gi_545778205_gb_U000_247
GGGGGCCUUACAGAAGGAAAGGGUUAUGAUGAAGCUCGUCAUCAUACUGA
UUGUGUUGUUACUCGUAAGUUUCGCAGCUUAUUAACAGCCAAUCAGAGGG
GGGAGAAAUCCUCCCUCACCCUUGUUCCUUUACUUUAGGUUGAAAA
...(((((....((((((((((((((((((((......))))))))(((((((.(((((((...(((((((....)))))))))))))))))))))((((((((....)))))))).)))))..))))))).....)))))..... (-59.40)

Length sequence

: 146

Length match:

115