gi_545778205_gb_U000_249

cmsearch-Rfam

Family :

sn2903

Id:

RF01194

Type:

Gene; snRNA; snoRNA; CD-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01194

Description:

not description

Score:

23.6

E-value:

0.009

From sequence:

2247643

To sequence:

2247564

Alignments:

                                                                                                                 NC
                               <<<<_____________________________________________________________________________ CS
               RF01194       1 GaGCGGUGAUGAAUGCACGUAUUGCUCUGACACCUCUUAUGUUAGCGGUAAAUUUCCGUGCCGCGAUGAGUCCAcUuGGAU 81     
                               : GCGGUGAUGAA GCA  UAU   UCUGAC  C  U  UGU AGCGG  AA U C GU      AUG GUC ACU G AU
  gi_545778205_gb_U000 2247643 CGGCGGUGAUGAACGCAGUUAU---UCUGACGGCGGUGCUGUCAGCGGGUAACUCCGGUAU--GUAUGCGUCUACUCGUAU 2247568
                               *****************87776...79*************************998888765..469999999999998876 PP

                                          NC
                               ______>>>> CS
               RF01194      82 CUCUGAGCuC 91     
                                     GC :
  gi_545778205_gb_U000 2247567 ------GCUG 2247564
                               ......**** PP

RNAfold
>gi_545778205_gb_U000_249
GUGUACAGCAUACGAGUAGACGCAUACAUACCGGAGUUACCCGCUGACAG
CACCGCCGUCAGAAUAACUGCGUUCAUCACCGCCGCCGCAG
(((....((....((...((((((.......(((......)))(((((.((...)).)))))......))))))..))...))...))).. (-17.90)

Length sequence

: 91

Length match:

78