gi_545778205_gb_U000_251

cmsearch-Rfam

Family :

snoR69Y

Id:

RF01198

Type:

Gene; snRNA; snoRNA; CD-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01198

Description:

not description

Score:

29.6

E-value:

0.0047

From sequence:

3583332

To sequence:

3583428

Alignments:

                                                                                                                 NC
                               <<<<<___________________.________________________________________________________ CS
               RF01198       1 ugugguaGcgAUGAUGAUAAauga.UAAUCCCAGCUCUAUGAGACCUUuuauUAAGGUCuaGGAgUAuAauuauuuuccaA 80     
                               ::U::UAG +AU AUGAU A+U+  UAA CCC G UCUA  AGA C  UUA U  G UC  GGA UAUA   +UU   ++A
  gi_545778205_gb_U000 3583332 UUUUAUAGAAAUAAUGAUGAUUUCaUAAACCCUGAUCUACAAGAACGGUUAGU--GAUCGGGGAUUAUAGCAUUUC-AAUA 3583409
                               ********************99877**********************999999..************998877666.5555 PP

                                                   NC
                               ______________>>>>> CS
               RF01198      81 cAUaUaUCUGAGCCucaca 99     
                               + UA  U UGA   ::A::
  gi_545778205_gb_U000 3583410 UUUACUUAUGACAUUAAAG 3583428
                               56666668999888***** PP

RNAfold
>gi_545778205_gb_U000_251
UUUUAUAGAAAUAAUGAUGAUUUCAUAAACCCUGAUCUACAAGAACGGUU
AGUGAUCGGGGAUUAUAGCAUUUCAAUAUUUACUUAUGACAUUAAAGG
..(((((((((((.(((.(((...((((.((((((((.((...........)))))))))).))))...)))))).))))).).)))))......... (-17.80)

Length sequence

: 98

Length match:

95