gi_545778205_gb_U000_252

cmsearch-Rfam

Family :

SNORA5

Id:

RF00392

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF00392

Description:

ACA5 is a member of the H/ACA class of snoRNA that guide the sites of modification
of uridines to pseudouridines [1].

Score:

26.1

E-value:

0.0038

From sequence:

1147718

To sequence:

1147644

Alignments:

                                                                                                                NC
                               :<<<<------------<<<<<<<<<<<________>>>>>>>>>>>---------->>>>-----~~~~~~:::::::: CS
               RF00392       1 UGCAGccauGUCAAAUUCaGugCCugccCUgucuAUggcaGGcaCuGGCCcAGAaGGCUGCCACAG*[60]*AGACAucA 134    
                               UGC    A+ U  AAUUCAGUGCCUGC: UG     :GCAGGCACUG C C GAAGG  GCCA A        GACAUC 
  gi_545778205_gb_U000 1147718 UGC---GAAUUAGAAUUCAGUGCCUGCAAUGC----UGCAGGCACUGUCACGGAAGG--GCCAAAA*[10]*UGACAUCU 1147644
                               ***...5788888**************97753....9********************..***9875...9..******** PP

RNAfold
>gi_545778205_gb_U000_252
GAUACCUUGACACGUCUAACCCUGGCGUUAGAUGUCAUGGGAGGGGAUUU
UGGCCCUUCCGUGACAGUGCCUGCAGCAUUGCAGGCACUGAAUUCUAAUU
CGCAACUCACUCUUCUUUUAGUCGGCAAUUCCGA
............((((((((......))))))))(((((((((((........)))))))))))(((((((((((....)))))))))))...............................((((.....)))) (-52.10)

Length sequence

: 134

Length match:

73